Publications

Lee YS*# , Levdansky Y* , Jung Y , Kim VN# , Valkov E# (2024). Deadenylation kinetics of mixed poly (A) tails at single-nucleotide resolution. Nature Structural & Molecular Biology.

DOI pubmed Press 한빛사 인터뷰

Ku J* , Lee K* , Ku D , Kim S , Lee J , Bang H , Kim N , Do H , Lee H , Lim C , Han J , Lee YS# , Kim Y# (2024). Alternative polyadenylation determines the functional landscape of inverted Alu repeats. Molecular Cell.

Fabia B , Kim M , Lim J , Lee YS# (2023). Mathematical Modeling of mRNA Poly (A) Tail Shortening Process. Deadenylation: Methods and Protocols.

Kim JY* , Jeon K* , Hong JJ* , Park SI* , Cho H* , Park HJ* , Kwak HW , Park HJ , Bang YJ , Lee YS , Bae SH , Kim SH , Hwang KA , Jung DI , Cho SH , Seo SH , Kim G , Oh H , Lee HY , Kim KH , Lim HY , Jeon P , Lee JY , Chung J , Lee SM , Ko HL , Song M , Cho NH# , Lee YS# , Hong SH# , Nam JH# (2023). Heterologous vaccination utilizing viral vector and protein platforms confers complete protection against SFTSV. Scientific Reports.

J. Park , M. Kim , H. Yi , K. Baeg , Y. Choi , Y. S. Lee , J. Lim , V N. Kim# (2023). Short poly (A) tails are protected from deadenylation by the LARP1–PABP complex. Nature Structural & Molecular Biology.

S. Lee* , H. Kim* , A. Hong* , J. Song* , S. Lee , M. Kim , S. Hwang , D. Jeong , J. Kim , A. Son , Y. S. Lee , V N. Kim , J. Kim , H. Chang# , K. Ahn# (2022). Functional and molecular dissection of HCMV long non-coding RNAs. Scientific Reports.

H. Kim# , S. Jang , Y. S. Lee# (2022). The m6A(m)-independent role of FTO in regulating WNT signaling pathways. Life Science Alliance.

H. Kim# , S. Jang , Y. S. Lee# (2021). Crosstalk between Fat Mass and Obesity-related (FTO) and multiple WNT signaling pathways. biorxiv.

S. Lee* , Y. S. Lee* , Y. Choi , A. Son , Y. Park , K.-M. Lee , J. Kim , J.-S. Kim , V. N. Kim# (2021). The SARS-CoV-2 RNA interactome. Molecular Cell.

H. Kim*# , Y. S. Lee* , S.-M. Kim , S. Jang , H. Choi , J.-W. Lee , T.-D. Kim# , V. N. Kim# (2021). RNA demethylation by FTO stabilizes the FOXJ1 mRNA for proper motile ciliogenesis. Developmental Cell.

Y. Ku* , J.-H. Park* , R. Cho* , Y. Lee , H.-M. Park , M.A Kim , K. Hur , S. Y. Byun , J. Liu , Y. S. Lee , D. Shum , D.-Y. Shin , Y. Koh , J.-Y. Cho , S.-S. Yoon , J. Hong# , Y. Kim# (2021). Noncanonical immune response to the inhibition of DNA methylation by Staufen1 via stabilization of endogenous retrovirus RNAs. PNAS.

D. Kim* , Y. S. Lee* , S. J. Jung* , J. Yeo* , J. J. Seo , Y. Y. Lee , J. Lim , H. Chang , J. Song , J. Yang , K. Ahn , G. Jung , V. N. Kim# (2020). Viral hijacking of the TENT4–ZCCHC14 complex protects viral RNAs via mixed tailing. Nature Structural & Molecular Biology.

A. Chaney , A. Verma , Y. S. Lee , B. Engelhardt (2020). Nonparametric Deconvolution Models. arXiv.

Y. Choi* , K. Jeong* , S. Shin* , J. W. Lee* , Y. S. Lee , S. Kim , S. A. Kim , J. Jung , K. P. Kim , V. N. Kim# , J.-S. Kim# (2020). MS1-Level Proteome Quantification Platform Allowing Maximally Increased Multiplexity for SILAC and In Vitro Chemical Labeling. Analytical Chemistry.

S. C. Kwon , S. C. Baek , Y. G. Choi , J. Yang , Y. S. Lee , J. S. Woo# , V. N. Kim# (2019). Molecular Basis for the Single-Nucleotide Precision of Primary microRNA Processing. Molecular Cell.

Y. S. Lee , A. Krishnan , R. Oughtred , J. Rust , C. S. Chang , J. Ryu , V. N. Kristensen , K. Dolinski , C. L. Theesfeld# , O. G. Troyanskaya# (2019). A Computational Framework for Genome-wide Characterization of the Human Disease Landscape. Cell Systems.

DOI pubmed software

J. Lim* , D. Kim* , Y. S. Lee* , M. Ha , M. Lee , J. Yeo , H. Chang , J. Song , K. Ahn , V. N. Kim# (2018). Mixed tailing by TENT4A and TENT4B shields mRNA from rapid deadenylation. Science.

Y. S. Lee , A. K. Wong , A. Tadych , B. M. Hartmann , C. Y. Park , V. A. DeJesus , I. Ramos , E. Zaslavsky# , S. C. Sealfon# , O. G. Troyanskaya# (2018). Interpretation of an individual functional genomics experiment guided by massive public data. Nature Methods.

DOI pubmed software

C. J. Nirschl* , M. Suarez-Farinas* , B. Izar , S. Prakadan , R. Dannenfelser , I. Tirosh , Y. Liu , Q. Zhu , K. S. P. Devi , S. L. Carroll , D. Chau , M. Rezaee , T. G. Kim , R. Huang , J. Fuentes-Duculan , G. X. Song-Zhao , N. Gulati , M. A. Lowes , S. L. King , F. J. Quintana , Y. S. Lee , J. G. Krueger , K. Y. Sarin , C. H. Yoon , L. Garraway , A. Regev , A. K. Shalek , O. Troyanskaya , N. Anandasabapathy# (2017). IFNgamma-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment. Cell.

C. Y. Park , A. Krishnan , Q. Zhu , A. K. Wong , Y. S. Lee , O. G. Troyanskaya# (2015). Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms. Bioinformatics.

Y. S. Lee , A. Krishnan , Q. Zhu , O. G. Troyanskaya# (2013). Ontology-aware classification of tissue and cell-type signals in gene expression profiles across platforms and technologies. Bioinformatics.

DOI pubmed software

W. Ju* , C. S. Greene* , F. Eichinger , V. Nair , J. B. Hodgin , M. Bitzer , Y. S. Lee , Q. Zhu , M. Kehata , M. Li , S. Jiang , M. P. Rastaldi , C. D. Cohen , O. G. Troyanskaya# , M. Kretzler# (2013). Defining cell-type specificity at the transcriptional level in human disease. Genome Research.